phpMyAdmin 3.5.8.2 and 4.0.4.2 have been released to fix security problems.
For more details, see the upcoming PMASA-2013-8 to PMASA-2013-15 (minus PMASA-2013-10 which is reserved for a future advisory).
Details will appear on http://phpmyadmin.net. In a hurry? you can visit https://sourceforge.net/projects/phpmyadmin/files to download.
Marc Delisle, for the team